Publications

• R. Sung^†, H. Kim^†, J. Kim^*, and D. Lee^*
  "FastTENET: an accelerated TENET algorithm based on manycore computing in Python" Bioinformatics (Accepted, JCR Top 10%).
  
  

• D. Lee
  "Hiding Secret Messages in Large-scale Graphs"
  Expert Systems with Applications (Accepted, JCR Top 10%).
  
  

• S. Han, J. K. Lee^*, D. Lee^*, J. Lee^*
  "Automated eyeball volume measurement based on CT images using neural network-based segmentation and simple estimation"
  Scientific Reports, 14:15094, 02 July 2024.
  
  

• H. Kim, H. Choi, D. Lee^*, and J. Kim^*
  "A Review on Gene Regulatory Network Reconstruction Algorithms based on Single Cell RNA Sequencing"
  Genes & Genomics, 30 Nov. 2023.
  
  
  

• D. Lee
  "LPF: a framework for exploring the wing color pattern formation of ladybird beetles in Python"
  Bioinformatics, 39(7), btad430, 08 July 2023 (JCR Top 5%).
  
  
  
  

  

  

• M. Bukhari, S. Yasmin, A. Habib, X. Cheng, F. Ullah, J. Yoo, and D. Lee^*
  "A Novel Framework for Melanoma Lesion Segmentation Using Multiparallel Depthwise Separable and Dilated Convolutions with Swish Activations"
  Journal of Healthcare Engineering, 2023:1847115, 06 Feb. 2023.
  
  
  
  
  

• D. Lee
  "Nezzle: an interactive and programmable visualization of biological networks in Python"
  Bioinformatics, 38(12): 3310-3311, 13 June 2022 (JCR Top 5%).
  
  
  
  
  

• D. Lee^*, T.-W. Oh, and K. Kim
  "Deep Audio Steganalysis in Time Domain"
  IH&MMSec'20, 23 June 2020. (*Corresponding Author, Acceptance Rate: 37%=19/51).
  
  
  
  
  
  

• D. Lee and K.-H. Cho
  "Signal flow control of complex signaling networks"
  Scientific Reports, 9:14289, 03 Oct. 2019.
  
  
  
  
  

• S.-M. Park, C. Y. Hwang, S.-H. Cho, D. Lee, J.-R. Gong, S. Lee, S. Nam, and K.-H. Cho
  "Systems analysis identifies potential target genes to overcome cetuximab resistance in colorectal cancer cells"
  The FEBS Journal, 286(7):1305-1318, 02 Feb. 2019.
  
  
  
  
  

• D. Lee and K.-H. Cho
  "Topological estimation of signal flow in complex signaling networks"
  Scientific Reports, 8:5262, 27 Mar. 2018.
  
  
  
  
  

• Waltemath et al.
  "Toward community standards and software for whole-cell modeling"
  IEEE Transactions on Biomedical Engineering, 63(10): 2007-2014, Oct. 2016.
  
  
  
  
  

• H. Chu^*, D. Lee^*, and K.-H. Cho
  "Precritical state transition dynamics in the attractor landscape of a molecular interaction network underlying colorectal tumorigenesis"
  PLoS ONE, 10(10):e0140172, Oct. 2015 (*Co-first author).
  
  
  
  
  

• D. Lee, M. Kim, and K.-H. Cho
  "A design principle underlying the paradoxical roles of E3 ubiquitin ligases"
  Scientific Reports, 4:5573, July 2014.
  
  
  
  
  

• S. U. Chaudhary, S.-Y. Shin, D. Lee, J.-H. Song and K.-H. Cho
  "ELECANS – An Integrated Model Development Environment for Multiscale Cancer Systems Biology"
  Bioinformatics, 29(7): 957-959, Apr. 2013.